Egg and Cheese Quesadillas with Black Beans

Recipes > Breakfast > Egg and Cheese Quesadillas with Black Beans

Last updated on: July 9, 2026

Made with whole grain tortillas, black beans, eggs, and pico de gallo, these quesadillas are a great addition to a balanced diet!
egg and cheese quesadilla with black beans stacked on a green plate

Learn How to Make the Base Recipe

This is a variation of our healthy quesadilla base recipe, and includes our easy refried black beans (without the refry!) and simple scrambled eggs as one of the fillings. Why stick to breakfast burritos for breakfast when you can have a quesadilla?? Scrambled eggs, black beans, pico, and warm gooey cheese all wrapped inside a toasty whole wheat tortilla with a side of guacamole–what’s not to love?! These egg and cheese quesadillas might just become a regular breakfast option for you!

 

Must Know Cooking Skills

For recipe success, learn how to:

Culinary Tips for Delicious Egg and Cheese Quesadillas

Watch the heat level as the breakfast quesadillas cook. If the heat is too high, the tortilla will get too brown before the cheese melts.

There’s no need for more than one pan for this recipe. Follow our simple scrambled eggs recipe to prevent the egg from sticking, then use the same pan to toast the tortilla. 

Allow quesadillas to cool slightly before cutting.

Ingredient Substitutions

  • Simple Scrambled Eggs: you can substitute liquid egg whites, but you will be missing out on some great nutrition from the yolk.
  • Whole Wheat Tortillas: substitute corn, flour, or gluten-free tortillas. Note that flour tortillas don’t provide the same whole grain benefits. Corn tortillas and smaller tortillas need to be stacked rather than folded.
  • Easy Refried Black Beans (without the refry!): substitute our smashed pinto beans or buy low-sodium refried black beans at the grocery store. Add some salsa for more flavor.
  • Shredded Cheese: substitute cheddar, Monterey jack, mozzarella, or queso oaxaca.
  • Butter or Canola Oil: substitute avocado or olive oil. Extra virgin olive oil can be used if the heat isn’t too high.

Recipe Variations

Add hot sauce, swap the pico for salsa, or change the cheese to a spreadable goat cheese. Make this easy breakfast quesadilla to YOUR taste!

Want more quesadilla recipe inspiration?

Use our healthy quesadilla base recipe as a guide or try out these tasty variations!

three whole wheat muffins on a plate with a pan of muffins in the background

Healthy Quesadilla Base Recipe

three whole wheat muffins on a plate with a pan of muffins in the background

Chicken Black Bean Quesadillas

three whole wheat muffins on a plate with a pan of muffins in the background

Sweet Potato Quesadillas

three whole wheat muffins on a plate with a pan of muffins in the background

Southwest Goat Cheese Quesadillas

Equipment Recommendations

Use these kitchen tools for recipe success:

Find all of our favorite kitchen tools here!

Is this egg and cheese quesadilla recipe healthy?

You bet! Made with whole grain tortillas, black beans, eggs, and pico de gallo, these quesadillas can definitely be part of a balanced diet.

Whole Wheat Tortillas

Whole grains are a good source of fiber, B vitamins, Vitamin E, trace minerals, and phytonutrients. Replacing refined grains (i.e. flour tortillas) with whole grains (i.e. whole wheat tortillas) may reduce the risk of developing chronic conditions such as heart disease, diabetes, and certain types of cancer.

Choose whole wheat tortillas with as few additives as possible. Reference our ingredient guide for more grocery shopping tips.

Black Beans

Beans contain plant-based protein, complex carbohydrates, fiber, vitamins, and minerals and are an important part of a plant-forward diet. These nutrients promote gut health, decrease risk of developing heart disease, cancer, and diabetes, and promote a healthy weight. When purchasing canned beans, look for low-sodium varieties.

Eggs

For a long time, it was recommended to limit eggs and other foods high in cholesterol, but more recent research shows that dietary cholesterol does not usually impact blood level cholesterol. Eggs do contain some saturated fat in the yolk, which can raise cholesterol levels, so be mindful of that if you need to lower your cholesterol.

That said, this doesn’t mean you should just stick to egg whites. While the white is rich in protein, the yolk contains protein as well as disease-fighting phytonutrients, vitamins, minerals, and healthy fats. Eat the whole egg for best nutrition! 

Learn more about health benefits of different foods and ingredients or in our book, To Your Taste!

Serving Suggestions for Scrambled Egg Quesadillas

To make a balanced Whole Life Plate breakfast, pair your quesadilla with a side of fruit. Don’t forget condiments, like plain Greek yogurt or sour cream, guacamole, and salsa for even more flavor and nutrition!

Storage Tips for Egg and Cheese Quesadillas

Cool quesadillas completely, then store in an airtight container in the refrigerator for up to 7 days. Leftover quesadillas can also be frozen for up to 3 months. Wrap individual quesadillas in foil or plastic wrap, then place in a freezer-safe bag

Quesadillas taste best reheated on a griddle or skillet or in the oven, but the microwave will work in a pinch.

Want more tasty breakfast recipes?

Try out these favorites!

Nut Butter Toast Base Recipe

Greek Yogurt Smoothie Base Recipe

Yogurt Parfait Base Recipe

Baked Oatmeal Cups Base Recipe

egg and cheese quesadilla with black beans stacked on a green plate

Egg and Cheese Quesadillas with Black Beans

This is a variation of our healthy quesadilla base recipe, and includes our easy refried black beans (without the refry!) and simple scrambled eggs as two of the fillings. Why stick to tacos and burritos for breakfast when you can have a quesadilla? Scrambled eggs, black beans, pico, and warm gooey cheese all wrapped inside a toasty whole wheat tortilla with a side of guacamole–what’s not to love?!
No ratings yet
Prep Time 10 minutes
Cook Time 10 minutes
Total Time 20 minutes
Course Breakfast, Main Dish
Cuisine Mexican
Servings 4 quesadillas
Calories 337 kcal

Ingredients
  

  • 4 eggs, scrambled and cooked
  • 4 whole wheat tortillas (~8")*
  • ½ cup easy refried black beans (see notes for recipe)
  • 1 cup shredded pepper jack cheese
  • ¼ cup pico de gallo
  • 1 teaspoon butter or canola oil

Instructions
 

  • Preheat a griddle or skillet over medium low heat.
  • Spread 2 Tablespoons of black beans to cover each tortilla, leaving a small border around the edge. Top half of each tortilla with ¼ cup shredded cheese, ~¼ cup eggs (1 scrambled egg), and 1 Tablespoon pico de gallo. Fold in half.
  • Brush griddle or skillet with ~½ teaspoon oil or butter. Once butter is melted, add quesadillas. Cook until golden brown and toasty on one side and the cheese is partially melted, 2-3 minutes.
  • Carefully flip and cook on the other side for another 2-3 minutes or until the tortillas are golden brown and toasty on both sides and cheese is melted.
  • Remove quesadillas carefully from pan. If cutting, allow to cool slightly. Repeat with remaining ingredients, brushing the pan with more oil or butter as needed. Serve with condiments to YOUR taste. Enjoy!

Notes

*Substitute two corn tortillas or smaller flour tortillas (~5”) for the whole wheat tortilla. Rather than folding in half, stack the tortillas with the filling in between.
Learn how to make simple scrambled eggs here.
Refer to our easy refried black beans (without the refry) here!
 
Condiments to YOUR taste
  • Plain Greek yogurt, lime crema, or sour cream
  • Salsa 
  • Pickled jalapeños
  • Guacamole

Nutrition

Serving: 1quesadillaCalories: 337kcalCarbohydrates: 30gProtein: 18gFat: 16gSaturated Fat: 8gPolyunsaturated Fat: 1gMonounsaturated Fat: 4gTrans Fat: 0.1gCholesterol: 169mgSodium: 617mgPotassium: 152mgFiber: 5gSugar: 4gVitamin A: 521IUVitamin C: 1mgCalcium: 320mgIron: 2mg
Keyword Egg and Cheese Quesadilla
Tried this recipe?Let us know how it was!

FAQ Questions:

Can I use different tortillas?

Yes, you can use flour, corn, or gluten-free tortillas instead of whole wheat tortillas.

Pepper jack, cheddar, Monterey jack, mozzarella, or queso Oaxaca all melt well and work great.

Yes, using whole wheat tortillas, black beans, and eggs already makes it a balanced meal rich in protein and fiber.

Absolutely. You can add salsa, guacamole, jalapeños, vegetables, or even different beans to customize the flavor.

    Leave a Reply

    Recipe Rating




    Did you make this recipe?

    Let us know how it turned out for you! Leave a comment above and share a picture on Instagram or Facebook using the hashtag #totasterecipes! And don’t forget to share it with all of your friends and family!

    Please note that this post may contain affiliate links. As an Amazon Associate and Share-a-Sale affiliate, we earn from qualifying purchases. If you click on those links and make a purchase, we will earn a small percentage of the sale, at no extra cost to you. 

    Check Out Our Latest Base Recipes

    Lindsey and Vahista to Taste Cover Photo

    Hey guys! We are To Taste – a team of registered dietitians/chefs.

    We want to teach you how to cook confidently, simplify nutrition, and feel better (no BS)!

    Our Recipe Promise

    Healthy eating shouldn't be complicated. Period.

    Meet the only meal plan you'll ever need.

    Improve your kitchen efficiency! Learn how to slice, dice, and chop 20 common ingredients

    Subscribe to our weekly newsletter

    Never miss a beet! Sign up for updates, recipes, and course offerings!

    Measuring Cup

    Is your kitchen set up for success?

    Find all of our go-to kitchen tools, books, and accessories here!

    Pouring Icon

    Need some recipe guidance?

    Learn how to cook confidently to your taste using our base recipe concept.

    Basket Full of Food Icon

    Want to know which ingredients to buy?

    Download our free ingredient guide for helpful tips on which ingredients are best.

    Latest Recipes

    Recipes

    Follow Us

    Subscribe To Our Newsletter

    Master Knife Skills Like A Pro

    Slice faster, cook smarter, and feel confident in your kitchen—starting today.